Gene description for ompA |
Gene name |
outer membrane protein A |
Gene symbol |
ompA |
Other names/aliases |
ECK0948 con tolG tut |
Species |
Escherichia coli str. K-12 substr. MG1655 |
Experiment description of studies that identified ompA in Escherichia coli |
1
|
Experiment ID | 373 |
Identified molecule | protein
|
Extracellular vesicle type | Membrane vesicles |
MISEV | EVs |
Identification method | Mass spectrometry
|
PubMed ID |
17787032
|
Organism | Escherichia coli |
Experiment description | Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli. |
Authors | Lee EY, Bang JY, Park GW, Choi DS, Kang JS, Kim HJ, Park KS, Lee JO, Kim YK, Kwon KH, Kim KP, Gho YS. |
Journal name |
Proteomics
|
Publication year | 2007 |
Sample | Escherichia coli |
Sample name | Normal-Escherichia coli DH5α |
Isolation/purification methods | - |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Mass spectrometry |
EV-TRACK |
-
|
|
|
2
|
Experiment ID | 2184 |
Identified molecule | protein
|
Extracellular vesicle type | Outer membrane vesicles |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
34276573
|
Organism | Escherichia coli |
Experiment description | Differential Packaging Into Outer Membrane Vesicles Upon Oxidative Stress Reveals a General Mechanism for Cargo Selectivity |
Authors | Orench-Rivera N, Kuehn MJ. |
Journal name |
Front Microbiol
|
Publication year | 2021 |
Sample | Escherichia coli |
Sample name | E. coli strain BL21 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
3
|
Experiment ID | 2185 |
Identified molecule | protein
|
Extracellular vesicle type | Outer membrane vesicles |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
34276573
|
Organism | Escherichia coli |
Experiment description | Differential Packaging Into Outer Membrane Vesicles Upon Oxidative Stress Reveals a General Mechanism for Cargo Selectivity |
Authors | Orench-Rivera N, Kuehn MJ. |
Journal name |
Front Microbiol
|
Publication year | 2021 |
Sample | Escherichia coli |
Sample name | E. coli strain BL21 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
4
|
Experiment ID | 2232 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain DH5α - 9h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
5
|
Experiment ID | 2233 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain DH5α - 12h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
6
|
Experiment ID | 2234 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain DH5α - 18h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
7
|
Experiment ID | 2235 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain DH5α - 24h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
8
|
Experiment ID | 2236 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain BL21 (ClearColi) - 18h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
9
|
Experiment ID | 2237 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain BL21 (ClearColi) - 21h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
10
|
Experiment ID | 2238 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain BL21 (ClearColi) - 24h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
11
|
Experiment ID | 2239 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain BL21 (ClearColi) - 27h culture |
Isolation/purification methods | Differential centrifugation Ultracentrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
12
|
Experiment ID | 2244 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 6 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
13
|
Experiment ID | 2245 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 7 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
14
|
Experiment ID | 2246 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 8 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
15
|
Experiment ID | 2247 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 9 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
16
|
Experiment ID | 2248 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 10 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
17
|
Experiment ID | 2249 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 11 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
18
|
Experiment ID | 2250 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 - Fraction 12 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
19
|
Experiment ID | 2251 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
20
|
Experiment ID | 2253 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
21
|
Experiment ID | 2254 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
22
|
Experiment ID | 2255 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
23
|
Experiment ID | 2256 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
24
|
Experiment ID | 2257 |
Identified molecule | protein
|
Extracellular vesicle type | Exosomes |
MISEV | Small EVs |
Identification method | Western blotting
|
PubMed ID |
36648227
|
Organism | Escherichia coli |
Experiment description | Escherichia coli-Derived Outer Membrane Vesicles Relay Inflammatory Responses to Macrophage-Derived Exosomes |
Authors | Imamiya R, Shinohara A, Yakura D, Yamaguchi T, Ueda K, Oguro A, Minamiyama Y, Ichikawa H, Horiguchi Y, Osada-Oka M. |
Journal name |
mBio
|
Publication year | 2023 |
Sample | Escherichia coli |
Sample name | E. coli strain K-12 BW25113 |
Isolation/purification methods | Differential centrifugation Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | - |
Molecules identified in the study | Protein |
Methods used in the study | Western blotting |
EV-TRACK |
-
|
|
|
25
|
Experiment ID | 2219 |
Identified molecule | Protein
|
Extracellular vesicle type | Outer membrane vesicles |
MISEV | Small EVs |
Identification method | Mass spectrometry
|
PubMed ID |
32854612
|
Organism | Escherichia coli |
Experiment description | Probiotic Escherichia coli Nissle 1917-derived outer membrane vesicles enhance immunomodulation and antimicrobial activity in RAW264.7 macrophages |
Authors | Hu R, Lin H, Li J, Zhao Y, Wang M, Sun X, Min Y, Gao Y, Yang M. |
Journal name |
BMC Microbiol
|
Publication year | 2020 |
Sample | Escherichia coli |
Sample name | E. coli strain Nissle 1917 |
Isolation/purification methods | Centrifugation Filtration Centrifugal ultrafiltration Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density | 1.127-1.175 g/mL, 1.271-1.295 g/mL |
Molecules identified in the study | Protein |
Methods used in the study | Mass spectrometry |
EV-TRACK |
-
|
|
|